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  1. Home
  2. /Repositories
  3. /rdk/p2rank
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repoGitHubTrust 82 · PrimaryPublished 11d agoLive · 11d ago

rdk/p2rank

P2Rank: Protein-ligand binding site prediction from protein structure based on machine learning.

Lineage graph

Paper → model → repo connections mined from source citations (Tier-1 exact match).

Why these links exist

Every edge carries a method, confidence, and the source snippet that justified it — so bad links are debuggable.

  • PossiblePossibly related (embedding) · 62%Reshaping biomolecular structure prediction through strategic conformational exploration with HelixFold-S1 →
  • PossiblePossibly related (embedding) · 54%An Additive MLP-GNN Framework for Characterizing Chemical and Structural Contributions to Aqueous Solubility →
  • PossiblePossibly related (embedding) · 54%Beyond Drug Discovery: The Nanotechnology Molecular Optimization (NMO) Benchmark →
  • PossiblePossibly related (embedding) · 52%Bridging three-dimensional molecular structures and artificial intelligence with a conformation description language →
  • PossiblePossibly related (embedding) · 50%Explainable AI for Cancer Drug Response Prediction: Beyond Univariate Feature Attributions →
  • PossiblePossibly related (embedding) · 45%Predicting Therapeutic Outcome via Aligning Patient-Specific Knowledge Graph and Gene-Level Perturbation Representations →
  • PossiblePossibly related (embedding) · 52%$\mathtt{Q^2SAR}$: overcoming classical bottlenecks in drug discovery via quantum multiple kernel learning →

Covers

newsReshaping biomolecular structure prediction through strategic conformational exploration with HelixFold-S1newsBridging three-dimensional molecular structures and artificial intelligence with a conformation description language

Implements

paperAn Additive MLP-GNN Framework for Characterizing Chemical and Structural Contributions to Aqueous SolubilitypaperBeyond Drug Discovery: The Nanotechnology Molecular Optimization (NMO) BenchmarkpaperExplainable AI for Cancer Drug Response Prediction: Beyond Univariate Feature Attributions

Implements (incoming)

paperPredicting Therapeutic Outcome via Aligning Patient-Specific Knowledge Graph and Gene-Level Perturbation Representationspaper$\mathtt{Q^2SAR}$: overcoming classical bottlenecks in drug discovery via quantum multiple kernel learning

Related across the graph

paperBeyond Drug Discovery: The Nanotechnology Molecular Optimization (NMO) BenchmarknewsReshaping biomolecular structure prediction through strategic conformational exploration with HelixFold-S1paperPredicting Therapeutic Outcome via Aligning Patient-Specific Knowledge Graph and Gene-Level Perturbation Representationspaper$\mathtt{Q^2SAR}$: overcoming classical bottlenecks in drug discovery via quantum multiple kernel learningpaperExplainable AI for Cancer Drug Response Prediction: Beyond Univariate Feature AttributionspaperAn Additive MLP-GNN Framework for Characterizing Chemical and Structural Contributions to Aqueous SolubilitynewsBridging three-dimensional molecular structures and artificial intelligence with a conformation description language
Knowledge path·PBeyond Drug Discovery: The Nanotechnology Molecular Optimization (NMO) Benchmark→NReshaping biomolecular structure prediction through strategic conformational exploration with HelixFold-S1→PPredicting Therapeutic Outcome via Aligning Patient-Specific Knowledge Graph and Gene-Level Perturbation Representations→Rrdk/p2rank

Topics

binding-sitesbioinformaticschimeraxdockingdrug-discoverygroovyjavaligandmachine-learningmmcif

Explore

Search similar →Knowledge graph →All repos →Full intelligence feed →
Graph trust82Primary
Graph score441